StackOverflow2013

Note that there are some explanatory texts on larger screens.

plurals

POhttpclient interacting with ncbo annotator, parameters not being set correctly
primarykey
Id
9984398
data
AcceptedAnswerId
10038834
AnswerCount
1
ClosedDate
CommentCount
0
CommunityOwnedDate
CreationDate
2012-04-02T21:54:21.027
FavoriteCount
0
LastActivityDate
2012-04-06T03:35:11.750
LastEditDate
2012-04-03T02:49:02.857
LastEditorUserId
1253952
OwnerUserId
1253952
ParentId
0
PostTypeId
1
Score
0
ViewCount
106
LastEditorDisplayName
text
Body
I am trying to interact with the NCBO annotator by setting a few parameters, then executing the request. However, the query returns an error: "Forbidden: A valid API key is required to call REST services. Please visit <a href="http://bioportal.bioontology.org/account" rel="nofollow">http://bioportal.bioontology.org/account</a> to get your API key." My scala code is as follows: <pre><code>val annotatorUrl = "http://rest.bioontology.org/obs/annotator" val client = new DefaultHttpClient() var method = new HttpPost(annotatorUrl) val params = new BasicHttpParams params.setParameter("longestOnly", "true") params.setParameter("wholeWordOnly", "true") params.setParameter("filterNumber", "true") params.setParameter("stopWords", "") params.setParameter("withDefaultStopWords", "true") params.setParameter("isTopWordsCaseSensitive", "false") params.setParameter("mintermSize", "3") params.setParameter("scored", "true") params.setParameter("withSynonyms", "true") params.setParameter("ontologiesToExpand", "") params.setParameter("ontologiesToKeepInResult", "") params.setParameter("isVirtualOntologyId", "true") params.setParameter("semanticTypes", "") params.setParameter("levelMax", "0") params.setParameter("mappingTypes", "null") params.setParameter("textToAnnotate", query) params.setParameter("format", "xml") params.setParameter("apikey", "MY_API_KEY") method.setParams(params) val response = client.execute(method) return response.toString() </code></pre> That returns "HTTP/1.1 403 Forbidden [Date: Mon, 02 Apr 2012 21:41:13 GMT, Server: Apache/2.2.13 (Red Hat), Content-Length: 401, Vary: Accept-Encoding, Connection: close, Content-Type: text/xml;charset=UTF-8]" If I run the line: <pre><code>return method.getParams().getParameter("apikey").toString() </code></pre> it returns my correct api key, so it seems that that is being set correctly. Any ideas as to what I am doing incorrectly? Thanks.
Tags
<apache><post><httpclient>
Title
httpclient interacting with ncbo annotator, parameters not being set correctly
singulars
PostAcceptedAnswerId
1. PO
 singulars
 PostTypePostTypeId
 PTAnswer
PostParentId
1. This table or related slice is empty.
PostTypePostTypeId
1. PTQuestion
UserLastEditorUserId
1. USuser1253952
UserOwnerUserId
1. USuser1253952
plurals
PostLinksPostIdRelatedPostId
1. This table or related slice is empty.
PostLinksRelatedPostIdPostId
1. This table or related slice is empty.
PostsAcceptedAnswerId
1. This table or related slice is empty.
PostsParentIdCreationDate
1. PO
 singulars
 PostTypePostTypeId
 PTAnswer
VotesPostIdCreationDate
1. This table or related slice is empty.
CommentsPostId
1. This table or related slice is empty.

Querying!

Guidance

A row detail

Detail views are divided into sections. All the information in the data section comes from columns in the selected row. The other sections display data from other, related rows.

Related data can be related in a to-one or a to-many fashion. Captions of data related in a to-many fashion link to a list view showing a filtered view of the table.

Try moving around until you find a non-empty to-many entry and click on the label to get to one. You can move back to the root by clicking on the database name in the header.