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    <p>I don't think this is a problem with CMake; I believe gcc will always find your "time.h" before the system one, regardless of whether you use quotes or brackets in the <code>#include</code> and regardless of the various options in <code>include_directories</code>. See the entries for <code>-I</code> and <code>-isystem</code> in the <a href="http://gcc.gnu.org/onlinedocs/gcc/Preprocessor-Options.html#index-isystem-930" rel="nofollow">gcc documentation</a></p> <p>The <code>AFTER</code> option of CMake's <code>include_directories</code> relates only to the order of the directories as listed in the gcc command, it doesn't relate to gcc's <code>-idirafter</code> flag.</p> <p>It's not a great plan to have your own files with identical names to system files, but if your hands are tied, you could avoid this issue without renaming time.h by qualifying the path for your own includes more fully, so rather than e.g.</p> <pre><code>CMakeLists.txt: include_directories(${PROJECT_SOURCE_DIR}/src) header file: #include &lt;time.h&gt; // we want but don't get system one #include "time.h" // we want and get own custom one </code></pre> <p>something more like</p> <pre><code>CMakeLists.txt: include_directories(${PROJECT_SOURCE_DIR}) header file: #include &lt;time.h&gt; // we want and get system one #include "src/time.h" // we want and get own custom one </code></pre> <p><br/> An alternative option would be to stick with your current <code>#include</code> setup (using angle brackets for the system time.h and quotes for your own) and not use <code>include_directories</code> at all in the CMakeLists.txt. Instead I think you could replace it with something like:</p> <pre><code>set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -iquote ${PROJECT_SOURCE_DIR}/src") </code></pre> <p>Using <code>-iquote</code> is probably a better option than <code>-idirafter</code> since the directory specified by <code>-idirafter</code> is (in this case incorrectly) treated as a system directory, and as such has warnings suppressed, etc.</p> <p>If you do go for this choice, it's probably worth commenting the CMakeLists.txt to explain why there is no <code>include_directories</code> to avoid future refactoring reverting back to use the more normal <code>include_directories</code> command.</p> <p>All in all, your best option if at all possible would be to rename your "time.h" file though.</p>
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    1. COThanks a lot for the complete answer. The first option is not good for me as the problem is not with my files, but with system files like "sched.h", which mistakenly include my file instead of system one. So probably, I will go with using explicit compiler options instead of using include_directories.
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    2. COI came to this question because I had inadvertently created an empty local file called "new" in my include search path. This preempted the <new> system header which was used several #include levels away by a library I'm using. I spent hours figuring out why (message was **error: ‘nothrow’ is not a member of ‘std’** followed by a compiler crash). It seems like I can use the -iquote mechanism (is there a Visual Studio equivalent?) to ensure files included via angle brackets came only from system headers; it would be nice if that were supported via a CMake command.
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    3. CODoes anyone know if there's something like iquote in Visual Studio (cl.exe flag?)
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