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2011-12-22T08:03:47.503
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<p>A possible solution using enums, inspired by pablochan, with a little input from <a href="http://biostar.stackexchange.com/questions/15698/what-is-a-good-way-to-implement-getting-a-consensus-sequence-in-java" rel="nofollow">biostar.stackexchange.com</a>:</p> <pre><code>enum lut { AA('A'), AC('M'), AG('R'), AT('W'), AR('R'), AY('H'), AK('D'), AM('M'), AS('V'), AW('W'), AB('N'), AD('D'), AH('H'), AV('V'), AN('N'), CA('M'), CC('C'), CG('S'), CT('Y'), CR('V'), CY('Y'), CK('B'), CM('M'), CS('S'), CW('H'), CB('B'), CD('N'), CH('H'), CV('V'), CN('N'), GA('R'), GC('S'), GG('G'), GT('K'), GR('R'), GY('B'), GK('K'), GM('V'), GS('S'), GW('D'), GB('B'), GD('D'), GH('N'), GV('V'), GN('N'), TA('W'), TC('Y'), TG('K'), TT('T'), TR('D'), TY('Y'), TK('K'), TM('H'), TS('B'), TW('W'), TB('B'), TD('D'), TH('H'), TV('N'), TN('N'), RA('R'), RC('V'), RG('R'), RT('D'), RR('R'), RY('N'), RK('D'), RM('V'), RS('V'), RW('D'), RB('N'), RD('D'), RH('N'), RV('V'), RN('N'), YA('H'), YC('Y'), YG('B'), YT('Y'), YR('N'), YY('Y'), YK('B'), YM('H'), YS('B'), YW('H'), YB('B'), YD('N'), YH('H'), YV('N'), YN('N'), KA('D'), KC('B'), KG('K'), KT('K'), KR('D'), KY('B'), KK('K'), KM('N'), KS('B'), KW('D'), KB('B'), KD('D'), KH('N'), KV('N'), KN('N'), MA('M'), MC('M'), MG('V'), MT('H'), MR('V'), MY('H'), MK('N'), MM('M'), MS('V'), MW('H'), MB('N'), MD('N'), MH('H'), MV('V'), MN('N'), SA('V'), SC('S'), SG('S'), ST('B'), SR('V'), SY('B'), SK('B'), SM('V'), SS('S'), SW('N'), SB('B'), SD('N'), SH('N'), SV('V'), SN('N'), WA('W'), WC('H'), WG('D'), WT('W'), WR('D'), WY('H'), WK('D'), WM('H'), WS('N'), WW('W'), WB('N'), WD('D'), WH('H'), WV('N'), WN('N'), BA('N'), BC('B'), BG('B'), BT('B'), BR('N'), BY('B'), BK('B'), BM('N'), BS('B'), BW('N'), BB('B'), BD('N'), BH('N'), BV('N'), BN('N'), DA('D'), DC('N'), DG('D'), DT('D'), DR('D'), DY('N'), DK('D'), DM('N'), DS('N'), DW('D'), DB('N'), DD('D'), DH('N'), DV('N'), DN('N'), HA('H'), HC('H'), HG('N'), HT('H'), HR('N'), HY('H'), HK('N'), HM('H'), HS('N'), HW('H'), HB('N'), HD('N'), HH('H'), HV('N'), HN('N'), VA('V'), VC('V'), VG('V'), VT('N'), VR('V'), VY('N'), VK('N'), VM('V'), VS('V'), VW('N'), VB('N'), VD('N'), VH('N'), VV('V'), VN('N'), NA('N'), NC('N'), NG('N'), NT('N'), NR('N'), NY('N'), NK('N'), NM('N'), NS('N'), NW('N'), NB('N'), ND('N'), NH('N'), NV('N'), NN('N'); char consensusChar = 'X'; lut(char c) { consensusChar = c; } char getConsensusChar() { return consensusChar; } } char getConsensus(char a, char b) { return lut.valueOf("" + a + b).getConsensusChar(); } </code></pre>
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1. POWhat is a good way to implement getting a consensus sequence in Java?
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1. POWhat is a good way to implement getting a consensus sequence in Java?
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