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585795
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2009-02-25T12:31:12.673
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2009-02-27T21:04:32.517
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2009-02-27T21:04:32.517
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Rothko
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I don't think anyone will be able to fit code for a full application into a tiny window, but I'll give you some thoughts, based on how I might approach this: <ol> <li><a href="http://www.r-project.org/" rel="nofollow noreferrer">Install <code>R</code></a></li> <li><a href="http://astor.som.jhmi.edu/BayesMendel/Rpackage.html" rel="nofollow noreferrer">Install <code>BayesMendel</code> package</a> -- this includes <code>BRCAPRO</code> routines</li> <li><a href="http://rpy.sourceforge.net/" rel="nofollow noreferrer">Install <code>RPy</code></a> -- a Python-to-R bridge</li> <li>Write <a href="http://rpy.sourceforge.net/rpy_demo.html" rel="nofollow noreferrer"><code>RPy</code>-based <code>Python</code> code</a> for bringing your data into <code>R</code>, turning it into <a href="http://fs6.depauw.edu:50080/~harvey/Chem%20351/PDF%20Files/Handouts/RDocs/Using%20Data%20Frames%20and%20Indexing%20in%20R.pdf" rel="nofollow noreferrer">a data frame</a>, and <a href="http://astor.som.jhmi.edu/BayesMendel/BayesMendel-manual.pdf" rel="nofollow noreferrer">analyzing the data frame with the <code>BRCAPRO</code> component of <code>BayesMendel</code></a></li> <li>Bridging the analytical output of <code>BayesMendel</code> to a <a href="http://pytut.infogami.com/node11-baseline.html" rel="nofollow noreferrer"><code>brcaResults</code> class that you write</a></li> <li><a href="http://www.python.org/doc/faq/gui/" rel="nofollow noreferrer">Wrap accessors to your <code>brcaResults</code> class in a GUI</a>, using any one of many Python GUI frameworks</li> </ol> That's an overview of one way to do this. The nice thing about this approach is that this should be easy to glue together and keep up-to-date with new <code>BRCAPRO</code> features.
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1. POWriting a GUI for the BRCAPRO Cancer Gene Risk Calculation Engine
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1. USAlex Reynolds
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1. USAlex Reynolds
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