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POXsl subtrings with pattern
 

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  1. POXsl subtrings with pattern
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    <p>I would like to retrieve a value of my xml file with a xsl template but I have no idea how to retrieve these value...</p> <p>I have this XML file </p> <pre><code>&lt;BlastOutput_iterations&gt; &lt;Iteration&gt; &lt;Iteration_iter-num&gt;1&lt;/Iteration_iter-num&gt; &lt;Iteration_query-ID&gt;Query_1&lt;/Iteration_query-ID&gt; &lt;Iteration_query-def&gt;Teg18as_antisens&lt;/Iteration_query-def&gt; &lt;Iteration_query-len&gt;865&lt;/Iteration_query-len&gt; &lt;Iteration_hits&gt; &lt;Hit&gt; &lt;Hit_num&gt;1&lt;/Hit_num&gt; &lt;Hit_id&gt;gnl|BL_ORD_ID|30&lt;/Hit_id&gt; &lt;Hit_def&gt;gi|150392480|ref|NC_009632.1| Staphylococcus aureus subsp. aureus JH1, complete genome&lt;/Hit_def&gt; &lt;Hit_accession&gt;2233&lt;/Hit_accession&gt; &lt;Hit_len&gt;2906507&lt;/Hit_len&gt; &lt;Hit_hsps&gt; &lt;Hsp&gt; &lt;Hsp_num&gt;1&lt;/Hsp_num&gt; &lt;Hsp_bit-score&gt;1561.20031714635&lt;/Hsp_bit-score&gt; &lt;Hsp_score&gt;1730&lt;/Hsp_score&gt; &lt;Hsp_evalue&gt;0&lt;/Hsp_evalue&gt; &lt;Hsp_query-from&gt;1&lt;/Hsp_query-from&gt; &lt;Hsp_query-to&gt;865&lt;/Hsp_query-to&gt; &lt;Hsp_hit-from&gt;355668&lt;/Hsp_hit-from&gt; &lt;Hsp_hit-to&gt;356532&lt;/Hsp_hit-to&gt; &lt;Hsp_query-frame&gt;1&lt;/Hsp_query-frame&gt; &lt;Hsp_hit-frame&gt;1&lt;/Hsp_hit-frame&gt; &lt;Hsp_identity&gt;865&lt;/Hsp_identity&gt; &lt;Hsp_positive&gt;865&lt;/Hsp_positive&gt; &lt;Hsp_gaps&gt;0&lt;/Hsp_gaps&gt; &lt;Hsp_align-len&gt;865&lt;/Hsp_align-len&gt; &lt;Hsp_qseq&gt;CAACTCGTTAGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTTGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCGCAATTTGTGTGTTGATAAATTGATGGTCGGTATTACGCGATTGATCCGTTGTTAAAAGTACTAAATCTGCACAATCTGTAAGTTTACTACCTTCGAAATTTGTGATGGCAACGACATATGCACCATGAGATTTGGCGACTTCCGCTGCTGAAATTAATTCCGAAGTATTACCACTATTTGACATAGCAATAAACATGTCCGAATGAGATAGTAGGGATGCCGATATTTTCATTAAATGTGAATCGGTAGTAACATTACCTTTTAGCCCCATACGAATCATACGATAATAAAATTCAGTCGCTGATAAACCAGAGCTACCTAGTCCAGCAAAGAGTATATGTCGACTTGATTGGAGTTTGTCGATAAAGGTTTGGATAATGTCGTTATCAATAAATTCACCAGTTTGTTGAATGATTTGTTGATGATATTTATGAATTCTTTGAATAATTGGGCTATTTTCAATAACTGTCTCTGTCATTTCTTGTTGAATATTAAATTTTAAATCTTGGAAATTCTCATAATCTAGCTTATGACTAAAGCGTGTCATCGTTGCTGGTGATGTACCAATCGCATGGGCTAAGGAGTTAATCGTTGAAAAGGCATCGCTATAACCATTTTGTCTTATATAATTGACGATGCGTTTATCAGTTTTTGTAAATAAATGTTGATAACGTTGAACACGATTCTCAAATTTCATT&lt;/Hsp_qseq&gt; &lt;Hsp_hseq&gt;CAACTCGTTAGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTTGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCGCAATTTGTGTGTTGATAAATTGATGGTCGGTATTACGCGATTGATCCGTTGTTAAAAGTACTAAATCTGCACAATCTGTAAGTTTACTACCTTCGAAATTTGTGATGGCAACGACATATGCACCATGAGATTTGGCGACTTCCGCTGCTGAAATTAATTCCGAAGTATTACCACTATTTGACATAGCAATAAACATGTCCGAATGAGATAGTAGGGATGCCGATATTTTCATTAAATGTGAATCGGTAGTAACATTACCTTTTAGCCCCATACGAATCATACGATAATAAAATTCAGTCGCTGATAAACCAGAGCTACCTAGTCCAGCAAAGAGTATATGTCGACTTGATTGGAGTTTGTCGATAAAGGTTTGGATAATGTCGTTATCAATAAATTCACCAGTTTGTTGAATGATTTGTTGATGATATTTATGAATTCTTTGAATAATTGGGCTATTTTCAATAACTGTCTCTGTCATTTCTTGTTGAATATTAAATTTTAAATCTTGGAAATTCTCATAATCTAGCTTATGACTAAAGCGTGTCATCGTTGCTGGTGATGTACCAATCGCATGGGCTAAGGAGTTAATCGTTGAAAAGGCATCGCTATAACCATTTTGTCTTATATAATTGACGATGCGTTTATCAGTTTTTGTAAATAAATGTTGATAACGTTGAACACGATTCTCAAATTTCATT&lt;/Hsp_hseq&gt; &lt;Hsp_midline&gt;|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||&lt;/Hsp_midline&gt; &lt;/Hsp&gt; &lt;/Hit_hsps&gt; &lt;/Hit&gt; &lt;/Iteration_hits&gt; &lt;/Iteration&gt; </code></pre> <p></p> <p>and a would like to retrieve NC_009632.1 in gi|150392480|ref|NC_009632.1| Staphylococcus aureus subsp. aureus JH1, complete genome, the structure of these line is always like "xx|number|xxx|value_to_retrieve| "</p> <p>thank for help</p>
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    1. USygizard
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    1. COGood question, +1. See my answer for a useful, general tokenization template, which I use in a complete and easy XSLT 1.0 solution to find the wanted text.
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      1. USDimitre Novatchev
 

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