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    <p>I can give you some examples from the bootstrap.php I use:</p> <pre><code> public function _initDoctrine() { if(PHP_MAJOR_VERSION == 5 &amp;&amp; PHP_MINOR_VERSION &gt;= 3) { require_once('bootstrapDoctrine.inc.php'); //things below this line are for convenience require_once(dirname(__FILE__).'/../library/doctrinehelpers/requireEntitiesOnce.php'); Zend_Registry::set('doctrineEm', $em); return $em; } } </code></pre> <p>And in the boostrapDoctrine.inc.php I have this:</p> <pre><code>use Doctrine\Common\ClassLoader, Doctrine\ORM\Configuration, Doctrine\ORM\EntityManager, Doctrine\Common\Cache\ArrayCache, Doctrine\DBAL\Logging\EchoSQLLogger; require_once(realpath(APPLICATION_PATH . '/../library').'/doctrine2/lib/Doctrine/Common/ClassLoader.php'); $doctrineClassLoader = new ClassLoader('Doctrine', realpath(APPLICATION_PATH . '/../library').'/doctrine2/lib'); $doctrineClassLoader-&gt;register(); //no way to have your proxies generated in different directory per ZF module it seems so we use a global one $proxiesClassLoader = new ClassLoader('Proxies', realpath(APPLICATION_PATH . '/models/doctrineproxies')); $proxiesClassLoader-&gt;register(); /* * @TODO make this step iterate over available modules */ $driverImpl = $config-&gt;newDefaultAnnotationDriver(array(APPLICATION_PATH . '/modules/mymodule1/models/doctrineentities',APPLICATION_PATH . '/modules/mymodule2/models/doctrineentities')); $config-&gt;setMetadataDriverImpl($driverImpl); $config-&gt;setMetadataCacheImpl($cache); $config-&gt;setQueryCacheImpl($cache); // Proxy configuration $config-&gt;setProxyDir(realpath(APPLICATION_PATH . '/models/doctrineproxies')); $config-&gt;setProxyNamespace('Proxies'); /** * this SQL logger is golden * @TODO implement a switch for verbose debugging */ // $logger = new Doctrine\DBAL\Logging\DebugStack(); // $config-&gt;setSQLLogger($logger); // register_shutdown_function(function($logger) { // echo '&lt;pre&gt;'; // print_r($logger-&gt;queries); // }, $logger); $config-&gt;setAutoGenerateProxyClasses( true ); //disable in production environment $doctrineConfig = $this-&gt;getOption('resources'); //from ini $dbparams = $doctrineConfig['db']['params']; $connectionOptions = array( 'driver' =&gt; $doctrineConfig['db']['adapter'], 'user' =&gt; $dbparams['username'], 'password' =&gt; $dbparams['password'], 'dbname' =&gt; $dbparams['dbname'], 'host' =&gt; $dbparams['host'] ); $em = EntityManager::create($connectionOptions, $config); //stored in zend registry later </code></pre> <p>To allow the doctrine commandline tool to function I had to create a library/doctrine2/lib/cli-config.php which is also a stripped down zend framework bootstrap. This config has the disadvantage that I have to call the doctrine cli from within this directory. Works for me ;)</p> <p> <pre><code>/* * @TODO make the cli-tool more flexible by better path detection */ // Define path to application directory defined('APPLICATION_PATH') || define('APPLICATION_PATH', realpath(dirname(__FILE__) . '/../../../application')); // Define application environment defined('APPLICATION_ENV') || define('APPLICATION_ENV', (getenv('APPLICATION_ENV') ? getenv('APPLICATION_ENV') : 'production')); // Ensure library/ is on include_path set_include_path(implode(PATH_SEPARATOR, array( realpath(APPLICATION_PATH . '/../library'), realpath(APPLICATION_PATH . '/../../include'), get_include_path(), ))); /** Zend_Application */ require_once 'Zend/Application.php'; // Create application, bootstrap, and run $application = new Zend_Application( APPLICATION_ENV, APPLICATION_PATH . '/configs/application.ini' ); $ application-&gt;getBootstrap()-&gt;bootstrap('doctrine'); $em = $application-&gt;getBootstrap()-&gt;getResource('doctrine'); /* $configuration = new \Doctrine\Common\Cli\Configuration(); $configuration-&gt;setAttribute('em', $em); */ $helperSet = new \Symfony\Components\Console\Helper\HelperSet(array( 'db' =&gt; new \Doctrine\DBAL\Tools\Console\Helper\ConnectionHelper($em-&gt;getConnection()), 'em' =&gt; new \Doctrine\ORM\Tools\Console\Helper\EntityManagerHelper($em) )); </code></pre> <p>Now we are all hoping for a better doctrine integration but this will only happen in ZF 2 going a big step towards namespaces like doctrine did allready.</p> <p>Hope I could help.</p>
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