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    <p>There are two major versions of ImageJ you can program against: the <a href="http://imagej.nih.gov/ij/" rel="nofollow">original ImageJ 1.x</a>, and the <a href="http://developer.imagej.net/" rel="nofollow">still-in-beta ImageJ2</a>.</p> <p>Either way, I strongly suggest <a href="http://fiji.sc/Maven" rel="nofollow">structuring your code as a Maven project</a>. By doing this, you avoid manually managing JAR files, and can develop your project in any Maven-enabled IDE (Eclipse, NetBeans, IDEA, etc.) or from the command line.</p> <p>The ImageJ artifacts (for either v1 or v2) are not yet available on Maven Central, but will be soon. Until then, you'll need to add a <code>&lt;repository&gt;</code> reference to <code>maven.imagej.net</code>. Here is a sample snippet for your <code>pom.xml</code>:</p> <pre><code>&lt;parent&gt; &lt;groupId&gt;org.scijava&lt;/groupId&gt; &lt;artifactId&gt;pom-scijava&lt;/artifactId&gt; &lt;version&gt;1.15&lt;/version&gt; &lt;/parent&gt; ... &lt;dependencies&gt; &lt;dependency&gt; &lt;groupId&gt;net.imagej&lt;/groupId&gt; &lt;artifactId&gt;ij&lt;/artifactId&gt; &lt;version&gt;${imagej1.version}&lt;/version&gt; &lt;/dependency&gt; &lt;/dependencies&gt; ... &lt;!-- NB: for project parent --&gt; &lt;repositories&gt; &lt;repository&gt; &lt;id&gt;imagej.releases&lt;/id&gt; &lt;url&gt;http://maven.imagej.net/content/repositories/releases&lt;/url&gt; &lt;/repository&gt; &lt;/repositories&gt; </code></pre> <p>Or if you want to depend on ImageJ2:</p> <pre><code>&lt;dependency&gt; &lt;groupId&gt;net.imagej&lt;/groupId&gt; &lt;artifactId&gt;ij-app&lt;/artifactId&gt; &lt;version&gt;${imagej.version}&lt;/version&gt; &lt;/dependency&gt; </code></pre> <p>For documentation of ImageJ1, ImageJ2 and related projects including many of their dependencies, see the javadoc at:</p> <ul> <li><a href="http://javadoc.imagej.net/" rel="nofollow">http://javadoc.imagej.net/</a></li> </ul> <p>For tutorials on how to use ImageJ2, see:</p> <ul> <li><a href="https://github.com/imagej/imagej-tutorials" rel="nofollow">https://github.com/imagej/imagej-tutorials</a></li> </ul> <p>And for more information on programming against ImageJ1, see:</p> <ul> <li><a href="http://imagej.net/developer/" rel="nofollow">http://imagej.net/developer/</a></li> </ul>
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    1. COThank you VERY much for your advices! I've studied Java at university, and after that I didn't use it for a while...now i need to start using it again and following ur advices is a good opportunity to learn using the latest standards (Maven..etc.)
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    2. CO@Danilo7 I'm glad it was helpful! Feel free to accept and/or upvote the answer to show your thanks.
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    3. COI forgot to do that yesterday! :)
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