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POHow can I convert peptide sequence into binary code
 

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  1. POHow can I convert peptide sequence into binary code
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    <pre><code>bin_dict = { 'A':'10000000000000000000', 'C':'01000000000000000000', 'D':'00100000000000000000', 'E':'00010000000000000000', 'F':'00001000000000000000', 'G':'00000100000000000000', 'H':'00000010000000000000', 'I':'00000001000000000000', 'K':'00000000100000000000', 'L':'00000000010000000000', 'M':'00000000001000000000', 'N':'00000000000100000000', 'P':'00000000000010000000', 'Q':'00000000000001000000', 'R':'00000000000000100000', 'S':'00000000000000010000', 'T':'00000000000000001000', 'V':'00000000000000000100', 'W':'00000000000000000010', 'Y':'00000000000000000001' } seq1="ACDE" bin_string='' svm_string='' for letter in seq: code = bin_dict[letter] print code </code></pre> <p>out put of this code is coming out like this </p> <pre><code>10000000000000000000 01000000000000000000 00100000000000000000 00010000000000000000 </code></pre> <p>My first question has been solved I got the output in desired manner, AS @goncalopp suggested I am trying to reintroduce my Qtn for better understanding.</p> <pre><code> Fig 1. </code></pre> <p>Step first: Seq = ACDE </p> <p>Step two: through this binary code position of int "1" would be calculated as given below </p> <pre><code> 10000000000000000000010000000000000000000010000000000000000000010000000000000000 | | | | 1:1 1:22 1:42 1:58 </code></pre> <p>Step three: calculated positions </p> <pre><code> 1:1 1:22 1:42 1:58 </code></pre> <p>Step four:</p> <pre><code> Ultimate output should be a text file having code only 1:1 1:22 1:42 1:58 to represent the string ACDE </code></pre> <p>now please suggest me what would be the python code for this.</p>
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    1. USmarc_s
    1. USJAZs
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    1. COAlso, please write just one question per post.
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      1. USLasse Vågsæther Karlsen
    2. COFor your first question, you just need to add a comma to your print: `print code,`. I don't fully understand your second questions. Do you just want to find the position of the 1s? You may want to rephrase the question, since most people on SO won't know what a peptide sequence is.
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    3. CO@ goncalopp i have edited my post please suggest the idea.
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