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I have finally managed to isolate the root cause of this error and identify a few red-herrings. First, it is a red herring that the issue does not occur where Visual Studio 2012 installed or does not happen on the developer workstations. While the issue occurs consistently on the build servers (TFS Build), it happens on the workstations too, provided the steps "Batch Clean All", followed "Build" are followed. Second, I can now confirm that the culprit for the MSB 3247 warning is the Microsoft BCL Build Nuget Package: <ul> <li>Microsoft.Bcl.Build.1.0.10</li> </ul> It modifies the web application project file, adding the following Import: <pre><code><Import Project="..\packages\Microsoft.Bcl.Build.1.0.10\tools\Microsoft.Bcl.Build.targets" Condition="Exists('..\packages\Microsoft.Bcl.Build.1.0.10\tools\Microsoft.Bcl.Build.targets')" /> <Target Name="EnsureBclBuildImported" BeforeTargets="BeforeBuild" Condition="'$(BclBuildImported)' == ''"> <Error Condition="!Exists('..\packages\Microsoft.Bcl.Build.1.0.10\tools\Microsoft.Bcl.Build.targets')" Text="This project references NuGet package(s) that are missing on this computer. Enable NuGet Package Restore to download them. For more information, see http://go.microsoft.com/fwlink/?LinkID=317567." HelpKeyword="BCLBUILD2001" /> <Error Condition="Exists('..\packages\Microsoft.Bcl.Build.1.0.10\tools\Microsoft.Bcl.Build.targets')" Text="The build restored NuGet packages. Build the project again to include these packages in the build. For more information, see http://go.microsoft.com/fwlink/?LinkID=317568." HelpKeyword="BCLBUILD2002" /> </Target> </code></pre> If I comment it out of the project file, the issue on the local workstations and the TFS Build Servers goes away. Unfortunately I do not know what the impact of commenting out the above really means. Can I leave it commented out - what will happen? The reason this Microsoft.Bcl.Build NuGet package is part of the project is because it's marked as a dependency to the Microsoft.Net.Http NuGet package which we do use. Earlier versions of the Microsoft.Net.Http NuGet package did not have this dependency on Microsoft.Bcl and Microsoft.Bcl.Build packages. Hope this helps someone. PS: This has a corresponding, but so far unhelpful forum post here: <a href="http://social.msdn.microsoft.com/Forums/vstudio/en-US/faa1b607-50bb-48e3-bd5d-76f4fc02ad4c/ms-build-gives-warning-msb3247-found-conflicts-between-different-versions-of-same-dependent?forum=msbuild" rel="nofollow">http://social.msdn.microsoft.com/Forums/vstudio/en-US/faa1b607-50bb-48e3-bd5d-76f4fc02ad4c/ms-build-gives-warning-msb3247-found-conflicts-between-different-versions-of-same-dependent?forum=msbuild</a>
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1. POTFS Build 2012, ASP.NET MVC & MSB3247: Found conflicts between different versions of same dependent assembly
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1. COPlease vote here https://aspnetoptimization.codeplex.com/workitem/119 to fix this type of issue.
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