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    <p>I am not familiar at all with a program called gaussian, so I have no clue what the original input looked like. If someone posts an example I might be able to give an even shorter solution.</p> <p>However, as far as I got it the OP is contented with the output of his/her code besided that he/she wants to append an increasing number to the lines inserted with <code>awk</code>.</p> <p>This can be achieved with the following line (adjusting the OP's code):</p> <pre class="lang-sh prettyprint-override"><code>grep -A 7 "Input orientation:" test.log | grep -A 5 "C" | awk '/C/{print "structure number"++i}1' | sed '/--/d' &gt; test.out </code></pre> <p><strong>Addendum:</strong></p> <p>Even without knowing the actual input, I am sure that one can at least get rid of the <code>sed</code> command leaving that piece of work to <code>awk</code>. Also, there is no need to quote a single character grep pattern:</p> <pre class="lang-sh prettyprint-override"><code>grep -A 7 "Input orientation:" test.log | grep -A 5 C | awk '/C/{print "structure number"++i}!/--/' &gt; test.out </code></pre> <p>I am not sure since I cannot test, but it should be possible to let <code>awk</code> do the <code>grep</code>'s work, too. As a first guess I would try the following:</p> <pre class="lang-sh prettyprint-override"><code>awk '/Input orientation:/{li=7}!li{next}{--li}/C/{print "structure number"++i;lc=5}!lc{next}{--lc}!/--/' test.log &gt; test.out </code></pre> <p>While this might be a little bit longer in code it is an <code>awk</code>-only solution doing all the work in one process. If I had input to test with, I might come up with a shorter solution.</p>
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