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POInstallation of bioconductor in R
 

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  1. POInstallation of bioconductor in R
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    <p>I am having some trouble installing the bioconductor package in R, it is hanging at the "testing if installed packages can be loaded" part</p> <pre><code> source("http://bioconductor.org/biocLite.R") #Installing package into ‘/homexxx/lib/R’ #(as ‘lib’ is unspecified) #trying URL 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/BiocInstaller_1.10.2.tar.gz' #Content type 'application/x-gzip' length 13424 bytes (13 Kb) #opened URL #================================================== #downloaded 13 Kb # #* installing *source* package ‘BiocInstaller’ ... #** R #** inst #** preparing package for lazy loading #** help #*** installing help indices #** building package indices #** testing if installed package can be loaded #^C #No traceback available #* removing ‘/home/xxx/lib/R/BiocInstaller’ # #The downloaded source packages are in # ‘/tmp/Rtmpb2nVhP/downloaded_packages’ #'biocLite.R' failed to install 'BiocInstaller', use # 'install.packages("BiocInstaller", # repos="http://www.bioconductor.org/packages/2.12/bioc")' </code></pre> <p>Here is R version:</p> <pre><code>R --version R version 3.0.1 (2013-05-16) -- "Good Sport" Copyright (C) 2013 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License versions 2 or 3. For more information about these matters see http://www.gnu.org/licenses/. </code></pre>
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    1. CODid you try to run `install.packages("BiocInstaller", repos="http://www.bioconductor.org/packages/2.12/bioc")` as was suggested by the error message?
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    2. COI tried that, same result.
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    3. COWhen I try to install it this is what I get: package ‘BiocInstaller’ is not available (for R version 3.0.0) maybe it is not available for version 3.0.1 either
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