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    <p>Your problem is with the two <code>.htaccess</code> files your are using. When using <code>.htaccess</code> it will use the file that is closest to the requested folder. In your case you have the following folder structure</p> <pre><code>- public_html - B1 - .htaccess //from codeigniter project .htaccess //your own with redirect </code></pre> <p>So when you call the url <code>mydomain.com/b1/controller/function</code> the closest <code>.htaccess</code> it can find is the codeigniter one, so it will use this one. Your own file will not be used. In other words your redirect rules are never even evaluated.</p> <p>Now if you call <code>mydomain.com/controller/function</code> the closest <code>.htaccess</code>, is your own and the request is redirected to <code>mydomain.com/b1/controller/function</code> as expected. There it will again try to find the closest <code>.htaccess</code> which is the codeigniter one and thus the request works.</p> <p>There are two things you can do. The first and best thing is to remove your <code>.htaccess</code> and copy all files and folders from the <code>b1</code> folder back to your <code>public_html</code> folder and then simply remove the <code>b1</code> folder. This way your server doesnt even have a <code>b1</code> folder and everything will work as expected.</p> <p>The second option would be to combine the two <code>.htaccess</code> files and keep them in your <code>public_html</code> folder. Make sure you delete the one in the <code>b1</code> folder. The file would look something like</p> <pre><code>RewriteEngine on RewriteRule ^b1/(.*)$ /$1 [R=301,L,NC] RewriteCond %{REQUEST_FILENAME} !-f RewriteCond %{REQUEST_FILENAME} !-d RewriteRule ^(.*)$ b1/index.php/$1 [L] </code></pre>
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    1. POCan 2 .htaccess files block URL rewriting
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    1. COFor several reasons, I think your second option is what I want to pursue. I removed the CI .htacess file and added yours in, but its now showing me a directory for public_html
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    2. COupdated the last line. Could be your server requires a / before the last b1, incase it still does not work
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    3. COI tried your new updated version with thelast rewrite rule as both RewriteRule ^(.*)$ b1/index.php/$1 [L] and RewriteRule ^(.*)$ /b1/index.php/$1 [L]. In both cases I just see a directory of mydomain.com
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