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    <p>Debugging C/C++ MEX files in gdb is already comprehensively covered in the <a href="http://www.mathworks.com/help/matlab/matlab_external/debugging-c-c-language-mex-files.html" rel="nofollow noreferrer">official documentation</a>, so my suggestion is to try and integrate gdb with Eclipse CDT.</p> <p>There's plenty of information out there about how to do it properly, so I'm not going to repeat everything here. The best tutorial I know is IBM's two-part guide, <i>"Interfacing with the CDT debugger"</i>:</p> <ol> <li><a href="http://www.ibm.com/developerworks/library/os-eclipse-cdt-debug1/index.html" rel="nofollow noreferrer"><i>Part 1: Understand the C/C++ debugger interface</i></a> - covers the high-level basics.</li> <li><a href="http://www.ibm.com/developerworks/library/os-eclipse-cdt-debug2/index.html" rel="nofollow noreferrer"><i>Part 2: Accessing gdb with the Eclipse CDT and MI</i></a> - explains how to make Eclipse work with gdb.</li> </ol> <p>I think part 2 is what you really need. Basically, you have to install a <a href="http://www.ibm.com/developerworks/apps/download/index.jsp?contentid=314937&amp;filename=os-eclipse-cdt-debug-ex-debugger-plugin.zip&amp;method=http&amp;locale=worldwide" rel="nofollow noreferrer">plug-in</a> and configure it in Eclipse.</p> <p>There are also quite a few related questions about this even here on StackOverflow:</p> <ol> <li><a href="https://stackoverflow.com/questions/3758794/how-do-i-use-gdb-in-eclipse-for-c-c-debugging">How do I use GDB in Eclipse for C/C++ Debugging?</a></li> <li><a href="https://stackoverflow.com/questions/4544711/how-to-install-gdb-debugger-to-eclipse-cdt">How to install GDB debugger to Eclipse CDT</a></li> <li><a href="https://stackoverflow.com/questions/1587748/debugging-with-eclipse-cdt-and-gdb">Debugging with Eclipse CDT and GDB</a></li> <li><a href="https://stackoverflow.com/questions/10177897/how-can-i-enter-commands-to-a-gdb-prompt-while-debugging-with-eclipse-cdt">How can I enter commands to a gdb prompt while debugging with Eclipse CDT?</a></li> </ol> <p>I haven't tried it out yet, so I hope this works.</p>
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    1. POIs it possible to debug mex code with Eclipse?
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    1. COYou have my thanks for the answer... I am using the way of official doc on linux but it is so time consuming compared to the GUI way of debugging. But I will take a look to the links you give.
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    2. CO@Erogol - I put a bounty on your question hoping to get better answers, especially for eclipse + gdb + linux configuration. Please pay attention to this question and answers during the bounty period, so we can find a working solution together. Thank you.
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    3. CO@EitanT - I was kind of hoping for a more detailed method for mex debug using eclipse on Linux. well, nobody else raised to the challenge so there you go, use this bounty well.
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