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    <h2>Edit: Easier now</h2> <p>as of Jekyll >= 0.12.1 redcarpet2 is natively supported by Jekyll, so you can simply set your config to <code>markdown: redcarpet</code> and you are good to go with GFM / fenced code blocks without the rest of this mumbojumbo...</p> <h2>Original answer</h2> <p>You explicitly ask for Github-flavored markdown, so I presume you aren't looking for answers that create code blocks with the non-markdown liquid format:</p> <pre><code>{% highlight python %} def yourfunction(): print "Hello World!" {% endhighlight %} </code></pre> <p>but would rather be able to write something with fenced code blocks:</p> <pre><code>```python def yourfunction(): print "Hello World!" ``` </code></pre> <p>etc. For this, you will want to use the <strong>redcarpet</strong> markdown parser. </p> <p>Github-flavored markdown uses a markdown parser called "Redcarpet" <a href="https://github.com/blog/832-rolling-out-the-redcarpet" rel="noreferrer">1</a>. Ironically, though Github flavored markdown uses <a href="https://github.com/vmg/redcarpet" rel="noreferrer">redcarpet2</a>, this markdown parser is not supported by Jekyll by default. Instead, you can add this as a plugin by installing that ruby gem </p> <pre><code>gem install redcarpet </code></pre> <p>and then adding the <a href="https://github.com/nono/Jekyll-plugins" rel="noreferrer">redcarpet2 Jekyll plugin</a>. (Installing a plugin in Jekyll amounts to placing the <code>.rb</code> ruby script given in that repository into your <code>_plugins</code> directory. Can be in a subdirectory of <code>_plugins</code> too). </p> <p>Then, as explained on the documentation there, edit your <code>_config.yml</code> to use redcarpet2: </p> <pre><code>markdown: redcarpet2 redcarpet: extensions: ["no_intra_emphasis", "fenced_code_blocks", "autolink", "strikethrough", "superscript"] </code></pre> <p>which adds the common extensions provided by github-flavored-markdown aka redcarpet2 (Well, almost. This won't do github specific markdown things like identify issues by number, or commits by hash, so they aren't technically the same). </p> <p>Having the plugin means, for the moment, you will have to build your site locally and copy the <code>_site</code> to github if you are hosting your site there, as redcarpet2 isn't available on the Github version of the jekyll engine (see this <a href="https://github.com/mojombo/jekyll/issues/200" rel="noreferrer">open issue</a> on Jekyll)</p> <p><strong>Note</strong>: You don't need all the markdown editors you've specified in your <code>_config.yml</code> by the way. For a basic example using redcarpet2, you might want to see this <a href="https://github.com/cboettig/labnotebook/blob/a52ec003d4a55c87b1284da60558831458ca5be8/_config.yml" rel="noreferrer">config</a> and the associated jekyll directory that goes with it. </p>
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    1. COIf I understand correctly, this [has been merged in to Jekyll master](https://github.com/mojombo/jekyll/pull/619) and is available in their latest release. Perhaps you should update your answer with an update at the top so people don't get confused?
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    2. COGood point; done now.
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    3. COLet me re-suggest that you put your edit at the top, your answer is long enough that somebody like me might miss the payoff at the bottom :) And thanks for the quick response.
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