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    <p><a href="http://www.kernel.org/pub/software/scm/git/docs/RelNotes-1.6.0.4.txt" rel="nofollow noreferrer">Git1.6.0.4</a> seems a bit old, especially if you consider that:</p> <ul> <li>in <a href="http://www.kernel.org/pub/software/scm/git/docs/RelNotes-1.6.3.4.txt" rel="nofollow noreferrer">1.6.3.4</a>, "<code>git apply --whitespace=fix</code>" did not fix trailing whitespace on an incomplete line</li> <li>in <a href="http://www.kernel.org/pub/software/scm/git/docs/RelNotes-1.6.3.3.txt" rel="nofollow noreferrer">1.6.3.2</a>, "<code>whitespace</code>" attribute that is set was meant to detect all errors known to git, but it told git to ignore trailing carriage-returns.</li> </ul> <p>Could you try with Git1.6.4.1, and rather than setting a global config, set an attribute on the files you want a special whitespace handle, like this <a href="http://kerneltrap.org/mailarchive/git/2008/6/12/2112874/thread" rel="nofollow noreferrer">patch describes</a>.</p> <p>In a given directory, create a <code>.gitattributes</code> file.</p> <pre><code>* -whitespace </code></pre> <p>which will ignore any 'whitespace' errors.</p> <p>Now that will not prevent any conflict due to lack of consistency but that may be worth trying.</p> <hr> <p>The patch was a test about:</p> <blockquote> <p>Only ignore whitespace errors in <code>t/tNNNN-*.sh</code> and the <code>t/tNNNN</code> subdirectories.<br> Other files (like test libraries) should still be checked.</p> </blockquote> <pre><code>t/.gitattributes t[0-9][0-9][0-9][0-9]-*.sh -whitespace t[0-9][0-9][0-9][0-9]/* -whitespace </code></pre> <hr> <p>Note (Git 2.3.2+, Q1 2015, <a href="https://github.com/git/git/commit/0a80bc9f13bf4373778e787b3a050f5b784faf30" rel="nofollow noreferrer">commit 0a80bc9</a>, by Junio C Hamano aka <a href="https://github.com/gitster" rel="nofollow noreferrer"><code>gitster</code></a>) "<code>git apply --whitespace=fix</code>" is no longer silent:</p> <blockquote> <p>"<code>git apply --whitespace=fix</code>" fixed whitespace errors in the common context lines but did so without reporting.</p> <p>When the incoming patch has whitespace errors in a common context line (i.e. a line that is expected to be found and is not modified by the patch), "<code>apply --whitespace=fix</code>" corrects the whitespace errors the line has, in addition to the whitespace error on a line that is updated by the patch.<br> However, we did not count and report that we fixed whitespace errors on such lines.</p> </blockquote>
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    1. CO*nods* Yeah, I've been using the git binary in the ubuntu repositories, but perhaps it's time that I got a bit closer to the most recent versions, maybe that'll help with the issue. I'll also see what difference the .gitattributes setting makes on the situation.
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    2. CO'lright, I've (happily) added the launchpad ppa for the latest stable version of git in ubuntu, hopefully that'll fix things up.
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    3. COUpgrading does seem to have solved some of the issues that I had in the past.
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