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    <p>This isn't a bug, it's documented behaviour. From <code>man git-clean</code>:</p> <blockquote> <p>If an untracked directory is managed by a different git repository, it is not removed by default.</p> </blockquote> <p>The <code>submod</code> directory is a different <code>git</code> repository; if you want to remove it, <code>Use -f option twice if you really want to remove such a directory</code>. </p> <p><code>git clean -f -f -d submod</code> <em>does</em> remove <code>submod</code>. See my steps below (almost identical; different <code>git version</code> and hard-coded <code>submodule</code> path because otherwise <code>git</code> spits the dummy). </p> <hr> <h2>Steps</h2> <pre><code> $ git --version git version 1.7.5.4 # Note, different git-version. </code></pre> <h3>Make the two repositories</h3> <pre><code> git init submod cd submod echo "This is a submodule" > README.txt git add . git commit -m "Initial commit" cd .. git init prog cd prog echo "This is a program" > README.txt git add . git commit -a -m "Initial commit" </code></pre> <h3>Add <code>submod</code> as a <code>git submodule</code> in <code>topic1</code> branch.</h3> <pre><code> git checkout -b topic1 git submodule add /Users/simont/sandbox/SOTESTING/Subdir-testing/submod git commit -m "Added submodule" </code></pre> <h3>Now for the interesting section.</h3> <pre><code> $ git checkout master warning: unable to rmdir submod: Directory not empty Switched to branch 'master' git status # On branch master # Untracked files: # (use "git add ..." to include in what will be committed) # # submod/ #nothing added to commit but untracked files present (use "git add" to track) </code></pre> <h3>Attempt to <code>git-clean</code>, then <em>actually</em> <code>git-clean</code>.</h3> <pre><code> git clean -fd #Removing submod/ git status # On branch master # Untracked files: # (use "git add ..." to include in what will be committed) # # submod/ #nothing added to commit but untracked files present (use "git add" to track) $ # As we can see, we haven't actually removed anything yet. $ ls README.txt submod $ git clean -f -f -d submod Removing submod/ $ ls README.txt $ git status # On branch master nothing to commit (working directory clean) </code></pre>
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    1. POgit clean is not removing a submodule added to a branch when switching branches
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    1. USsimont
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    1. POgit clean is not removing a submodule added to a branch when switching branches
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    1. COI like the fact that the -ff option is mentioned in the -d section of the man page, but not in the -f section...
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      1. USmarc.guenther
    2. COThis is awesome! I'm using it as `git clean -ffxd` (to remove ignored files as well). At some point I may post to the mailing list about adding a submodule section (and maybe adding a hint in the error message).
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