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copied!<p>Found a working solution by myself.</p> <p>All the external libraries in the dist/lin folder had a size of 0kb. So the exception was correct, of course.</p> <p>To get my application running I did the following in the project's jfx-impl.xml:</p> <p><strong>Add the classpath to manifest.mf</strong> </p> <pre><code><fxjar destfile="${jfx.deployment.dir}/${jfx.deployment.jar}" applicationClass="${main.class}" > <fileset dir="${build.classes.dir}"/> <manifest> <attribute name="Implementation-Vendor" value="${application.vendor}"/> <attribute name="Implementation-Title" value="${application.title}"/>  <attribute name="Class-Path" value="${jar.classpath}"/>  <attribute name="Implementation-Version" value="1.0"/> </manifest> </fxjar> </code></pre> <p><strong>Create an output dir for web deployment</strong></p> <pre><code><property name="jfx.deployment.web.dir" location="${jfx.deployment.dir}/web" /> <mkdir dir="${jfx.deployment.web.dir}" /> </code></pre> <p><strong>Set output dir for fxdeploy task</strong></p> <pre><code><fxdeploy width="${jfx.applet.width}" height="${jfx.applet.height}" outdir="${jfx.deployment.web.dir}"  embedJNLP="true" outfile="${application.title}"> <info title="${application.title}" vendor="${application.vendor}"/> <application name="${application.title}" appclass="${main.class}"/> <resources type="eager"> <fileset dir="${jfx.deployment.web.dir}">  <include name="${jfx.deployment.jar}"/> <include name="lib/*.jar"/> <exclude name="**/jfxrt.jar"/> </fileset> </resources> </fxdeploy> </code></pre> <p>Now, I can deploy my desktop application and execute ist via doubleclick from windows explorer or by entering</p> <pre><code>java -jar TestApp.jar </code></pre> <p>There still exists some issue with the content of my newly created web-dir. </p> <ol> <li>The TestApp.jar ist not copied zo dist/web</li> <li>The referenced external jars are not copied to dist/web</li> </ol> <p>This is fine for me and will be fixed some time later. </p> <p>Hope this helps anyone else.</p>

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