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copied!<p>I am working with this website: <a href="http://bioinfo.uni-plovdiv.bg/microinspector/" rel="nofollow">http://bioinfo.uni-plovdiv.bg/microinspector/</a></p> <p>And from the mech-dump, I get </p> <pre><code>POST http://bioinfo.uni-plovdiv.bg/microinspector/cgi/result-new1.plx target_name= (text) target_sequence= (textarea) Choose an organism : =Choose an organism: (option) [*Choose an organism:|-NEMATODES------------------|C. elegans/Caenorhabditis elegans|C. briggsae/Caenorhabditis briggsae|Capitella sp. I|Cerebratulus lacteus|Saccoglossus kowalevskii|Schistosoma japonicum|Schistosoma mansoni|Schmidtea mediterranea|Strongylocentrotus purpuratus|Haliotis rufescens|Lottia gigantea|-PLANTS------------------|Arabidopsis thaliana|Zea mays|Oryza sativa|Sorghum bicolor|-VIRUSES------------------|Rhesus lymphocryptovirus|Epstein Barr virus|Human cytomegalovirus|Kaposi sarcoma-associated herpesvirus|Mouse gammaherpesvirus|BK polyomavirus|Herpes Simplex Virus 1|Herpes Simplex Virus 2|Human immunodeficiency virus 1|JC polyomavirus|Mareks disease virus|Mareks disease virus type 2|Merkel cell polyomavirus|Mouse cytomegalovirus|Mouse gammaherpesvirus 68|Rhesus monkey rhadinovirus|Simian virus 40/Human immunodeficiency virus 1|-VIRIDIPLANTAE------------------|Triticum aestivum|Selaginella moellendorffii|Populus trichocarpa|Pinus taeda|Physcomitrella patens|Arabidopsis thaliana|Glycine max|Medicago truncatula|Oryza sativa|Populus trichocarpa|Saccharum officinarum|Sorghum bicolor|Zea mays|Brassica napus|Brassica oleracea|Carica papaya|Lotus japonicus|Vigna unguiculata|Gossypium herbecium|Gossypium hirsutum|Gossypium rammindii|Solanum lycopersicum|Brassica rapa|Vitis vinifera|-ARTHROPODS------------------|Drosophila melanogaster|Drosophila pseudoobscura|Apis mellifera|Anopheles gambiae|Ixodes scapularis/Ixodes scapularise|Bombyx mori|Drosophila ananassae|Drosophila erecta|Drosophila grimshawi|Drosophila mojavensis|Drosophila persimilis|Drosophila sechellia|Drosophila simulans|Drosophila virilis|Drosophila willistoni|Drosophila yakuba|Locusta migratoria|Tribolium castaneum|-VERTEBRATES------------------|Bos taurus|Xenopus tropicalis|Monodelphis domestica|Lemur catta|Lagothrix lagotricha|Gorilla gorilla|Ateles geoffroyi|Ovis aries|Homo sapiens|Fugu rubripes|Macaca nemestrina|Macaca mulatta|Mus musculus|Canis familiaris|Rattus norvegicus|Rattus norvegicus|Pan paniscus|Pan troglodytes|Pongo pygmaeus|Saguinus labiatus|Saguinus labiatus|Sus scrofa|Gallus gallus|Danio rerio|Xenopus laevis|Tetraodon nigroviridis|Pygathrix bieti|Symphalangus syndactylus|Ornithorhynchus anatinus|Cricetulus griseus|-HORDEATES------------------|Branchiostoma floridae|Ciona intestinalis|Ciona savignyi|Oikopleura dioica|-PROTISTAE-------------------|Chlamydomonas reinhardtii|Dictyostelium discoideum|-OTHER-------------------|Amphimedon queenslandica|Hydra magnipapillata|Nematostella vectensis] user_small= (textarea) temperature=37 (text) mfe=-20 (text) Submit= Search (submit) Reset=<UNDEF> (reset) POST http://www.aardvarkmailinglist.net/sub/account_manager.php?action=add cid=20804 (hidden readonly) cqid=LSI (hidden readonly) lid=12305 (hidden readonly) sub_email= (text) Submit=Subscribe (submit) </code></pre> <p>This is what I have so far.</p> <pre><code>use strict; use warnings; use WWW::Mechanize; # create object for browser my $browser = WWW::Mechanize->new(); my ($sequence, $results); open (DRG, "<microRNA_target_cspg_drg_output.fa") || die "cannot open microRNA_target_cspg_drg_output.fa"; while (<DRG>) { chomp; $sequence=$_; last; #for testing purposes } close (DRG); $browser->get("http://bioinfo.uni-plovdiv.bg/microinspector/"); $browser->form_number(1); $browser->field("target_sequence", $sequence); $browser->field("Choose an organism : ", "Mus musculus"); my $response = $browser->click_button( number => 1); print $response->content(); </code></pre> <p>I am not sure what to do next; I feel like I am not setting the organism correctly (it is a drop down menu so I need to select) but I don't think I am writing it right in the code. </p> <pre><code>$browser->field("Choose an organism : ", "Mus musculus"); </code></pre> <p>In addition, once the form is clicked it goes to a new page (url is POST?). Any help is appreciated. Thank you. I get this when I run the above code</p> <pre><code><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" lang="en-US" xml:lang="en-US"> <head> <title>A New MiRNA Program</title> <meta http-equiv="Content-Type" content="text/html; charset=windows-1251" /> </head> <body> Status: 500 Content-type: text/html <h1>Software error:</h1> <pre>Illegal division by zero at /usr/local/lib/perl5/site_perl/5.8.9/Bio/Graphics/Panel.pm line 237. </pre> <p> For help, please send mail to the webmaster (<a href="mailto:vebaev@uni-plovdiv.bg">vebaev@uni-plovdiv.bg</a>), giving this error message and the time and date of the error. </p> </code></pre> <p>The sequence that is being inputted is this for anyone who wants to try it</p> <p>AAACACACTGGGGAATGGAGCAAGACAGTCTTTGAATATCAAACACGCAAGGCAATGAGACTACCCATCATAGATATCGCACCCTATGACATTGGGGGTCCTGATCAAGAATTTGGTGTGGACATTGGCCCTGTTTGCTTTTTATAAGCCAAACTCTCTGAAACCCCAGCAAAACAAAAACCACATCCATGTGTTCATCTTGTTTTAATCTTATCAACCAGTGCAAGTGACCAACTAAATTCCAGTTATTTATTTCCAAACTTTTGGAAAAAGCATAATTTGACAAAAAAAGAATACAATTTTTTGCTGTTTCAACCACCCAATACAGGTCAAATGCTTTTGTTTTATTTTTTTACCAATTCCAACTTCAAAATGTCTCAATGGTGCTATAATAAATAAACGTCAACACTTTTATGATAA</p>

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