StackOverflow2013

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POFastq to fasta format with sed/awk command
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copied!<p>I have a data with fastq format:</p> <pre><code>@HISEQ:157:C11RCACXX:6:1101:1522:2491 2:N:0:CGTACG GTGCCNNNNNNNNNNNNNNNNNNNNNNNTGCGNNNNNNNNNNNNNNCNNGCAGATACTCGTANNNNNNNNNGNNNNNNNN NNNNNNNNNNNNNNNNNNNNN + @BCFF########################################################################### ##################### @HISEQ:157:C11RCACXX:6:1101:1668:2494 2:N:0:CGTACG TCTTTNNNNNNNNNNNNNNNNNNNNNNNATTGNNNNNNNNNNNNNNTTNTGTTTTACGGTTTNNNNNNNNGCNNNNNNNN NNNNNNNNNNNNNNNNNNNNN + C@CFF########################################################################### ##################### @HISEQ:157:C11RCACXX:6:1101:2557:2492 2:N:0:CGTACG CCTCTNNNNNNNNNNNNNNNNNNNNNNNGTTGNNNNNNNNNNNNNNCNNCAACACACTCCTCNNNNNNNNGCNNNNNNNN NNNNNNNNNNNNNNNNNNNNN + CCCFF########################################################################### ##################### </code></pre> <p>and I want to split each read with "+" used awk command, but it didnt't work, Is there simple command with see/awk can convert it into fasta format?</p> <p>The expect output should be </p> <pre><code>>HISEQ:157:C11RCACXX:6:1101:1522:2491 2:N:0: CGTACGGTGCCNNNNNNNNNNNNNNNNNNNNNNNTGCGNNNNNNNNNNNNNNCNNGCAGATACTCGTANNNNNNNNNGNNNNNNNN NNNNNNNNNNNNNNNNNNNNN >HISEQ:157:C11RCACXX:6:1101:1668:2494 2:N:0: CGTACGTCTTTNNNNNNNNNNNNNNNNNNNNNNNATTGNNNNNNNNNNNNNNTTNTGTTTTACGGTTTNNNNNNNNGCNNNNNNNN NNNNNNNNNNNNNNNNNNNNN >HISEQ:157:C11RCACXX:6:1101:2557:2492 2:N:0: CGTACGCCTCTNNNNNNNNNNNNNNNNNNNNNNNGTTGNNNNNNNNNNNNNNCNNCAACACACTCCTCNNNNNNNNGCNNNNNNNN NNNNNNNNNNNNNNNNNNNNN </code></pre> <p>Thanks a lot!</p>

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